Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902109.1_cds_XP_016452116.1_46388
CDS Infomation

[gene=LOC107776714] [db_xref=GeneID:107776714] [protein=probable polygalacturonase At3g15720] [partial=5'] [protein_id=XP_016452116.1] [location=complement(join(157723..157956,158048..158164,158290..158398,158518..158599,158712..158922,159370..159396,159872..160036,160575..160709,160829..160948,164994..>165191))] [gbkey=CDS]
Sequence

CTCACTAATCTTGAATTTCAACTGGAATTTAAAAGCTTCAAAGAATTTTTGCTTTATCTA
GGTGAAAAATGGTTTAAAGAGCTGAAATTGTTGGATCTCTGGAAGCTGTTTGATTTGGTT
TTACTGCTGATATACTTGTTGGCTTGGTTTTGCTTTAAGTTGATTCTCAAAATTCTTGTT
TGTCTTTGCTGTAACCAGGACAGAGTTTCCATCTTTCTAGTTTTTGCTACTTCATTTATT
CTGCACCAAGGTCTTGCTGCTACTTTTGATGTCACGGATTATGGTGCTATTGGAGATGGA
GTAACTGATGATTCTCAAGCTTTTCAACAAGCTTGGCTAGATGTATGCTATGATTGTGAA
AATCCAACGATGAACCTACCAAGTGAAAAGTTATTCTTGTTGAGCCCTATATTATTTCAA
GGCCCTTGCAATTCTACCACTATTAATATACAGGTTTTAGGGAATATTACGGCACCCCAA
AATATAACAGAATGGGTAGGGTGTGAAAATGATAGTTGGCTTTATTTCACTGGGATATCT
GGTCTCATCATCAATGGCACTGGTCAAATTAATGGTCAAGGCGCTACCTGGTGGAACATT
TCTGGTCGCGCTCACAAGGTCAATGGGACTTGCCACAAGCCAACGGCTATGCACTTTAAT
TTTTGTAATGATCTTCAATTGAGTGGACTGAACCTTGTTAATAGTTCAAGAAACCATATT
AGCATTAATTTTAGCACAGGGGTAAATATCTCCAATATCACTATAACTGCACCTGAAGAT
AGCCCCAACACTGATGGTATTGACCTCTCTATGTCTACTACTCAAGTTCAAATTATGAAT
TCCACTATTCAAACAGGCGATGATTGTATTTCGATCAATACGGGATGTTCTGATATCAAT
ATTACTGGTATTTCATGTGGACCAGGACATGGTATAAGTGTAGGAAGTCTAGGAGTTAAT
GAGACTTTTGTTACTGTGGAGAATATAAATGTAACAAATTGTACCCTCCAAGGAACACAA
AATGGTGTAAGAATCAAAACATGGCAGGGTGGTATGGGCTATGCCAGATTTATAAATTTT
GAGAATATCAACCTCACAAATGTTCGTCATCCCATCATCATAGACCAATTCTATTGCAAT
GGTGCTCATAATTGTGGAGTTGAGCCAAATGCAGTCCAAGTGAGTAATGTAACATACAAG
GATATATTTGGGACAACACCAAGCAAAATAGCTATAAATATGAATTGCAGTGACAACTGC
ACAGCTTGCACCAGCTTAGTGTTTGAGCAAATTAATATAACCACAGTTTTTCCTGAAAAA
CAAACTCTTGCAGCTTGTAATAATGCTCATGGACAAGCCAACTCAACTTTACCCCCAATA
ACATGCTTGTTAACATGA

Peptide Sequence

PEP ID

XP_016452116.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720, partial [Nicotiana tabacum]
Sequence

LTNLEFQLEFKSFKEFLLYLGEKWFKELKLLDLWKLFDLVLLLIYLLAWFCFKLILKILV
CLCCNQDRVSIFLVFATSFILHQGLAATFDVTDYGAIGDGVTDDSQAFQQAWLDVCYDCE
NPTMNLPSEKLFLLSPILFQGPCNSTTINIQVLGNITAPQNITEWVGCENDSWLYFTGIS
GLIINGTGQINGQGATWWNISGRAHKVNGTCHKPTAMHFNFCNDLQLSGLNLVNSSRNHI
SINFSTGVNISNITITAPEDSPNTDGIDLSMSTTQVQIMNSTIQTGDDCISINTGCSDIN
ITGISCGPGHGISVGSLGVNETFVTVENINVTNCTLQGTQNGVRIKTWQGGMGYARFINF
ENINLTNVRHPIIIDQFYCNGAHNCGVEPNAVQVSNVTYKDIFGTTPSKIAINMNCSDNC
TACTSLVFEQINITTVFPEKQTLAACNNAHGQANSTLPPITCLLT

Transcript Sequence

Gene sequence data has not been registered.